Mapping and quantifying mammalian transcriptomes by RNA-Seq

A Mortazavi, Brian A. Williams, Kenneth McCue, +2

Nature Methods

Functional GenomicsGeneticsTranscriptomics TechnologyMammalian TranscriptomesLong Non-coding Rna +5

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell, Adam Roberts, Loyal A. Goff, +7

Nature Protocols

Differential GeneNatural SciencesGeneticsRna BiologyMolecular Biology +9

Alternative isoform regulation in human tissue transcriptomes

Eric T. Wang, Rickard Sandberg, Shujun Luo, +6

Nature

Gene RegulationSystems BiologyMedicineFunctional GenomicsGene Expression +2

mRNA-Seq whole-transcriptome analysis of a single cell

Fuchou Tang, Cátálin Bárbácioru, Yangzhou Wang, +9

Nature Methods

Single Cell SequencingMedicineSingle-cell BiologySingle-cell GenomicsTranscriptomics Technology +7

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

Simone Picelli, Åsa K. Björklund, Omid R. Faridani, +3

Nature Methods

BioinformaticsFunctional GenomicsSingle Cell SequencingMedicineSingle Cells +6

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

Liying Yan, Ming‐Yu Yang, Hongshan Guo, +15

Nature Structural & Molecular Biology

Embryonic Stem CellDevelopmental BiologyHuman Preimplantation EmbryosSingle Cell SequencingMedicine +13

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

Daniel Ramsköld, Shujun Luo, Yu-Chieh Wang, +9

Nature Biotechnology

Single-cell LevelsSingle Cell SequencingFull-length Mrna-seqMedicineImmunology +6

Molecular Definition of Breast Tumor Heterogeneity

Michail Shipitsin, Lauren L. Campbell, Pedram Argani, +18

Cancer Cell

Disease HeterogeneityBreast OncologyTumor HeterogeneityPathologyBreast Cancer +4

CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification

Tamar Hashimshony, Florian Wagner, Noa Sher, +1

Cell Reports

EngineeringGeneticsTranscriptomics TechnologySingle Cell SequencingTranscriptomics +16

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

Brian T. Wilhelm, Samuel Marguerat, Stephen Watt, +6

Nature

BioinformaticsSingle Cell SequencingNatural SciencesGeneticsDynamic Repertoire +10