Nature Methods · 2016 · 443 citations · 37 references
Life SciencesCell BiologyImmunologyCell DifferentiationCell Fate SpecificationTranscriptomicsCell-fate DynamicsLineage ReconstructionLineage TracingSingle-cell AnalysisSingle-cell Rna Sequencing AnalysisSingle-cell TranscriptomicsCell Fate ConversionCell Fate DecisionsCell Type ResolutionLineage InferenceSingle-cell Clonal AnalysisSingle-cell Fate AnalysisSingle-cell Gene Expression Profiling
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Fast gapped-read alignment with Bowtie 2
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FLASH: fast length adjustment of short reads to improve genome assemblies
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Near-optimal probabilistic RNA-seq quantification
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