Concepedia

Harold Pimentel

HP

Statistics

Publications

24

Citations

41.8K

H-Index

18

Active since

2011

Affiliations

University of California, Berkeley(Current)

Innovative Genomics Institute

Stanford University

Broad Institute

University of Iceland

Harold Pimentel is an author at University of California, Berkeley specializing in life sciences, transcriptomics, and bioinformatics.

Publications per year

2011–2024

24

Publications

24

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

Life Sciences, Bioinformatics, Genetics +14

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell, Adam Roberts, Loyal A. Goff et al. · Nature Protocols · 2012 · 12.9K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +12

Near-optimal probabilistic RNA-seq quantification

Nicolas Bray, Harold Pimentel, Páll Melsted et al. · Nature Biotechnology · 2016 · 11K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +6

Differential analysis of RNA-seq incorporating quantification uncertainty

Harold Pimentel, Nicolas Bray, Suzette Puente et al. · Nature Methods · 2017 · 1.7K citations · Full text

Life Sciences, Bioinformatics, Biostatistics +13

Identification of novel transcripts in annotated genomes using RNA-Seq

Adam Roberts, Harold Pimentel, Cole Trapnell et al. · Bioinformatics · 2011 · 1K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

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