International Journal of Molecular Sciences · 2015 · 36 citations · 16 references
Life SciencesBiochemistryMolecular BiologyBiocatalysisEnzyme MechanismEnzymologyActive Site ArchitectureEnzyme Active SitesEnzyme DiscoveryEnzyme FunctionEnzyme ScreeningEnzyme-substrate RecognitionActive Site MutagenesisActive Site Residue ConservationAmino AcidsEnzyme MutagenesisMutationSubstrate Specificity ProfilingSubstrate Specificity ScreeningTransaminase Catalysis
To alter the amine donor/acceptor spectrum of an (S)-selective amine transaminase (ATA), a library based on the Vibrio fluvialis ATA targeting four residues close to the active site (L56, W57, R415 and L417) was created. A 3DM-derived alignment comprising fold class I pyridoxal-5'-phosphate (PLP)-dependent enzymes allowed identification of positions, which were assumed to determine substrate specificity. These positions were targeted for mutagenesis with a focused alphabet of hydrophobic amino acids to convert an amine:α-keto acid transferase into an amine:aldehyde transferase. Screening of 1200 variants revealed three hits, which showed a shifted amine donor/acceptor spectrum towards aliphatic aldehydes (mainly pentanal), as well as an altered pH profile. Interestingly, all three hits, although found independently, contained the same mutation R415L and additional W57F and L417V substitutions.
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Addressing the Numbers Problem in Directed Evolution
Manfred T. Reetz, Daniel Kahakeaw, Renate Lohmer · ChemBioChem · 2008 · 440 citations
Rapid and Sensitive Kinetic Assay for Characterization of ω-Transaminases
Sebastian Schätzle, Matthias Höhne, Erik Redestad et al. · Analytical Chemistry · 2009 · 174 citations
Jong‐Shik Shin, Byung‐Gee Kim · The Journal of Organic Chemistry · 2002 · 161 citations