Nature · 2015 · 380 citations · 34 references
Life SciencesCell BiologyDevelopmental BiologyCell DifferentiationStem Cell BiologyTranscriptional RegulationCell Fate PlasticityCell PlasticityEmbryonic Stem CellsEnhancer FunctionLineage CommitmentStem Cell DifferentiationCell Lineage PlasticityPioneer FactorsPioneer Transcription FactorsStem Cell Gene RegulationSuper-enhancer FunctionSuper-enhancer InteractionsSuper-enhancer RegulationSuper-enhancers
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Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.9K citations · Full text
GREAT improves functional interpretation of cis-regulatory regions
Cory Y. McLean, Dave Bristor, Michael Hiller et al. · Nature Biotechnology · 2010 · 5K citations
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
Warren A. Whyte, David A. Orlando, Denes Hnisz et al. · Cell · 2013 · 4.3K citations · Full text
Super-Enhancers in the Control of Cell Identity and Disease
Denes Hnisz, Brian J. Abraham, Tong Ihn Lee et al. · Cell · 2013 · 3.9K citations · Full text