Concepedia

Whole-genome Alignment

Whole-Genome Alignment is a computational method in comparative genomics that aligns entire genome sequences across species to identify conserved regions, structural variations, and evolutionary relationships at the nucleotide level through global sequence homology.

450

Publications

82K

Citations

2.9K

Authors

914

Institutions

Publications per year

2017–2026

168

Parents

Publications

450

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Daehwan Kim, Joseph M. Paggi, Chanhee Park et al. · Nature Biotechnology · 2019 · 15.7K citations · Full text

, , +12

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

, , +14

Versatile and open software for comparing large genomes

Stefan Kurtz, Adam M. Phillippy, Arthur L. Delcher et al. · Genome biology · 2004 · 5.8K citations · Full text

, , +17

VISTA: computational tools for comparative genomics

Kelly A. Frazer, Lior Pachter, Alexandre Poliakov et al. · Nucleic Acids Research · 2004 · 3K citations · Full text

, , +16

MUMmer4: A fast and versatile genome alignment system

Guillaume Marçais, Arthur L. Delcher, Adam M. Phillippy et al. · PLoS Computational Biology · 2018 · 2.8K citations · Full text

, , +14

1–5 of 450

Authors

2.9K

  1. ID
    Inna Dubchak

    Lawrence Berkeley National Laboratory, United States

    9 publications · 4K citations

    9

    h-index

  2. KB
    Kathryn Beal

    European Bioinformatics Institute, United Kingdom

    8 publications · 2.8K citations

    8

    h-index

  3. JH
    Javier Herrero

    University College London, United Kingdom

    8 publications · 2.8K citations

    8

    h-index

  4. BP
    Benedict Paten

    University of California, Santa Cruz, United States

    8 publications · 761 citations

    8

    h-index

  5. SL
    Steven L. Salzberg

    Johns Hopkins University, United States

    8 publications · 39.4K citations

    8

    h-index

1–5 of 2.9K

Institutions

914

  1. University of California, Berkeley

    Berkeley, United States

    15 h-index

    44 publications

    21K citations

  2. University of California, Santa Cruz

    Santa Cruz, United States

    14 h-index

    67 publications

    30.1K citations

  3. National Institutes of Health

    Bethesda, United States

    13 h-index

    89 publications

    41.3K citations

  4. University of Washington

    Seattle, United States

    13 h-index

    43 publications

    5.1K citations

  5. Stanford University

    Stanford, United States

    12 h-index

    37 publications

    28.6K citations

  6. Pennsylvania State University

    State College, United States

    12 h-index

    37 publications

    18K citations

  7. Wellcome Sanger Institute

    Cambridge, United Kingdom

    12 h-index

    94 publications

    64.4K citations

  8. University of California, Davis

    Davis, United States

    11 h-index

    31 publications

    2.7K citations

1–8 of 914

Venues

  1. Bioinformatics

    24 publications · 2.7K citations

    22

    h-index

  2. Nucleic Acids Research

    22 publications · 8.6K citations

    19

    h-index

  3. Journal of Bacteriology

    JB · 17 publications · 661 citations

    17

    h-index

  4. Genome Research

    GR · 16 publications · 4.8K citations

    15

    h-index

  5. PLoS ONE

    15 publications · 812 citations

    14

    h-index

1–5