Concepedia

Author

Lior Pachter

University of California, BerkeleyORCID

Also Known As

Ali Mortazavi, Brian Patrick O'Neill, Byung Kook Lim, Dewey, Colin N, Emma Overton-Larty, Eric A. Stone, Jason D. Buenrostro, L Pachter, L S Pachter, L. Pachter

425

Publications

108.7K

Citations

82

H-Index

219

Concepts

All Affiliations

University of California, BerkeleyCalifornia Institute of TechnologyUniversity of IcelandMassachusetts Institute of TechnologyHoward Hughes Medical Institute
LP

About

Lior Pachter is an author at University of California, Berkeley specializing in medicine, functional genomics, and bioinformatics.

Top Concepts

#ConceptH-IndexPublicationsCitations

1

Medicine

49

80

57.6K

2

Engineering

31

47

16.9K

3

Natural Sciences

25

34

23.4K

4

Business

2

2

131

5

Management

1

1

12

Lior Pachter

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181

Publications

81.6K

Citations

71

H-Index

YearCitations

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea,

Nature Biotechnology

2010

16.1K

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell, Adam Roberts, Loyal A. Goff,

Nature Protocols

2012

12.6K

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg

Bioinformatics

2009

12K

Near-optimal probabilistic RNA-seq quantification

Nicolas Bray, Harold Pimentel, Páll Melsted,

Nature Biotechnology

2016

10.4K

Differential analysis of gene regulation at transcript resolution with RNA-seq

Cole Trapnell, David G. Hendrickson, Martin Sauvageau,

Nature Biotechnology

2012

3.7K

VISTA: computational tools for comparative genomics

Kelly A. Frazer, Lior Pachter, Alexandre Poliakov,

Nucleic Acids Research

2004

2.9K

Improving RNA-Seq expression estimates by correcting for fragment bias

Adam Roberts, Cole Trapnell, Julie Donaghey,

Genome biology

2011

1.8K

Disordered Microbial Communities in Asthmatic Airways

Markus Hilty, Conor M. Burke, Helder Pedro,

PLoS ONE

2010

1.8K

Differential analysis of RNA-seq incorporating quantification uncertainty

Harold Pimentel, Nicolas Bray, Suzette Puente,

Nature Methods

2017

1.6K

Streaming fragment assignment for real-time analysis of sequencing experiments

Adam Roberts, Lior Pachter

Nature Methods

2012

1.1K

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