Concepedia

Strain-level Genomics

Strain-Level Genomics is a genomic analytical framework that characterizes microbial diversity and evolutionary relationships at the resolution of individual strains within a species, distinguishing itself from broader taxonomic-level analyses by focusing on fine-scale genetic variation, including single-nucleotide polymorphisms, accessory gene content, and mobile genetic elements.

194

Publications

16K

Citations

1.3K

Authors

485

Institutions

Publications per year

2017–2026

87

Parents

Publications

194

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

Francesco Beghini, Lauren J. McIver, Aitor Blanco‐Míguez et al. · eLife · 2021 · 2.3K citations · Full text

, , +17

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini et al. · Nature Communications · 2020 · 897 citations · Full text

, , +17

A whole-genome microarray reveals genetic diversity among <i>Helicobacter pylori</i> strains

Nina R. Salama, Karen Guillemin, Timothy K. McDaniel et al. · Proceedings of the National Academy of Sciences · 2000 · 559 citations · Full text

, , +13

An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography

Stephen Nayfach, Beltran Rodriguez-Mueller, Nandita R. Garud et al. · Genome Research · 2016 · 531 citations · Full text

, , +14

The person-to-person transmission landscape of the gut and oral microbiomes

Mireia Valles‐Colomer, Aitor Blanco‐Míguez, Paolo Manghi et al. · Nature · 2023 · 451 citations · Full text

, , +17

1–5 of 194

Authors

1.3K

  1. MZ
    Moreno Zolfo

    University of Trento, Italy

    6 publications · 4K citations

    6

    h-index

  2. NS
    Nicola Segata

    University of Trento, Italy

    6 publications · 4K citations

    6

    h-index

  3. PM
    Paolo Manghi

    University of Trento, Italy

    5 publications · 3.8K citations

    5

    h-index

  4. FA
    Francesco Asnicar

    University of Trento, Italy

    5 publications · 3.8K citations

    5

    h-index

  5. JM
    Jonathan M. Monk

    University of California San Diego, United States

    4 publications · 503 citations

    4

    h-index

1–5 of 1.3K

Institutions

485

  1. Cornell University

    Ithaca, United States

    10 h-index

    24 publications

    1.9K citations

  2. University of Trento

    Trento, Italy

    7 h-index

    60 publications

    41.6K citations

  3. Broad Institute

    Cambridge, United States

    7 h-index

    25 publications

    17K citations

  4. University of California San Diego

    San Diego, United States

    6 h-index

    25 publications

    7.3K citations

  5. La Jolla Bioengineering Institute

    San Diego, United States

    5 h-index

    11 publications

    1.9K citations

  6. Centre National de la Recherche Scientifique

    Paris, France

    5 h-index

    11 publications

    883 citations

  7. China Agricultural University

    Beijing, China

    5 h-index

    20 publications

    2.1K citations

  8. Harvard University

    Cambridge, United States

    5 h-index

    20 publications

    18.1K citations

1–8 of 485

Venues

  1. Applied and Environmental Microbiology

    AEM · 15 publications · 785 citations

    15

    h-index

  2. Journal of Bacteriology

    JB · 14 publications · 1.4K citations

    14

    h-index

  3. BMC Genomics

    14 publications · 631 citations

    13

    h-index

  4. Frontiers in Microbiology

    9 publications · 357 citations

    9

    h-index

  5. PLoS ONE

    6 publications · 393 citations

    6

    h-index

1–5