Andrew Maltez Thomas

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

Francesco Beghini, Lauren J. McIver, Aitor Blanco‐Míguez et al. · eLife · 2021 · 2.3K citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Aitor Blanco‐Míguez, Francesco Beghini, Fabio Cumbo et al. · Nature Biotechnology · 2023 · 1.3K citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar et al. · Nature Medicine · 2019 · 1.1K citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

Francesco Asnicar, Sarah Berry, Ana M. Valdes et al. · Nature Medicine · 2021 · 993 citations · Full text

Life Sciences, Biology, Microbiology +16

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini et al. · Nature Communications · 2020 · 897 citations · Full text

Life Sciences, Biology, Microbiology +17