Concepedia

Single-cell Read Mapping

Single-Cell Read Mapping is a computational method in genomics that specifically aligns sequencing reads originating from individual cells to a reference genome, distinguishing itself from bulk read mapping by accounting for the unique technical artifacts and biological variability inherent in single-cell sequencing data.

12

Publications

1.4K

Citations

92

Authors

42

Institutions

Publications per year

2017–2026

11

Parents

Publications

12

zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs

Swati Parekh, Christoph Ziegenhain, Beate Vieth et al. · GigaScience · 2018 · 416 citations · Full text

, , +15

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data

Avi Srivastava, Laraib Malik, Tom Smith et al. · Genome biology · 2019 · 307 citations · Full text

, , +14

DNA template strand sequencing of single-cells maps genomic rearrangements at high resolution

Ester Falconer, Mark Hills, Ulrike Naumann et al. · Nature Methods · 2012 · 221 citations · Full text

, , +11

Linked-read analysis identifies mutations in single-cell DNA-sequencing data

Craig L. Bohrson, Alison R. Barton, Michael A. Lodato et al. · Nature Genetics · 2019 · 106 citations · Full text

, , +14

Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR–Cas9 barcodes by scGESTALT

Bushra Raj, James A. Gagnon, Alexander F. Schier · Nature Protocols · 2018 · 91 citations · Full text

, , +16

1–5 of 12

Authors

92

  1. CZ
    Christoph Ziegenhain

    Ludwig-Maximilians-Universität München, Germany

    2 publications · 457 citations

    2

    h-index

  2. BV
    Beate Vieth

    Ludwig-Maximilians-Universität München, Germany

    2 publications · 457 citations

    2

    h-index

  3. SP
    Swati Parekh

    Ludwig-Maximilians-Universität München, Germany

    2 publications · 457 citations

    2

    h-index

  4. WE
    Wolfgang Enard

    Ludwig-Maximilians-Universität München, Germany

    2 publications · 457 citations

    2

    h-index

  5. RP
    Rob Patro

    Stony Brook University, United States

    2 publications · 320 citations

    2

    h-index

1–5 of 92

Institutions

42

  1. Broad Institute

    Cambridge, United States

    2 h-index

    5 publications

    515 citations

  2. Harvard University

    Cambridge, United States

    2 h-index

    17 publications

    1.8K citations

  3. University of Cambridge

    Cambridge, United Kingdom

    2 h-index

    2 publications

    413 citations

  4. Ludwig-Maximilians-Universität München

    Munich, Germany

    2 h-index

    10 publications

    2.3K citations

  5. Philips (Finland)

    Vantaa, Finland

    1 h-index

    2 publications

    30 citations

  6. Kyung Hee University Medical Center

    Seoul, South Korea

    1 h-index

    1 publications

    31 citations

  7. Daewoo Pharma (South Korea)

    Busan, South Korea

    1 h-index

    1 publications

    36 citations

  8. Life Lab

    Santa Cruz, United States

    1 h-index

    1 publications

    15 citations

1–8 of 42

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 2 publications · 54 citations

    2

    h-index

  2. GigaScience

    1 publications · 416 citations

    1

    h-index

  3. Nature Methods

    1 publications · 221 citations

    1

    h-index

  4. Lab on a Chip

    1 publications · 15 citations

    1

    h-index

  5. Nature Biotechnology

    1 publications · 36 citations

    1

    h-index

1–5