Nature Methods · 2012 · 221 citations · 27 references
Life SciencesGeneticsMolecular BiologyGenome OrganizationGenomicsDna SequencingGenome RearrangementGenome SequencingSingle-cell AnalysisSingle-cell GenomicsGenomic RearrangementsSingle-cell Dna SequencingSingle-cell Genome SequencingSingle-cell Read Mapping
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text
Tumour evolution inferred by single-cell sequencing
Nicholas E. Navin, Jude Kendall, Jennifer Troge et al. · Nature · 2011 · 2.7K citations · Full text
Massive Genomic Rearrangement Acquired in a Single Catastrophic Event during Cancer Development
Philip J. Stephens, Chris Greenman, Beiyuan Fu et al. · Cell · 2011 · 2.4K citations · Full text