Concepedia

Regulatory Network Inference

Regulatory Network Inference is a computational and statistical methodology in systems biology that reconstructs the structure and, often, the directionality and strength of interactions in gene or cellular regulatory networks from high-dimensional molecular measurements such as bulk or single-cell transcriptomic and epigenomic data.

1.7K

Publications

129.5K

Citations

5.6K

Authors

1.6K

Institutions

Publications per year

2017–2026

534

Variants

Gene Regulatory Network InferenceGrn Inference

Parents

Children

Publications

1.7K

SCENIC: single-cell regulatory network inference and clustering

Sara Aibar, Carmen Bravo González‐Blas, Thomas Moerman et al. · Nature Methods · 2017 · 6.9K citations · Full text

, , +17

Causal analysis approaches in Ingenuity Pathway Analysis

A. Krämer, Jeff Green, Jack Pollard et al. · Bioinformatics · 2013 · 6.1K citations · Full text

, , +13

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

BMC Bioinformatics · 2006 · 2.5K citations · Full text

, , +14

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

Adam A. Margolin, Ilya Nemenman, Katia Basso et al. · Columbia Academic Commons (Columbia University) · 2006 · 2.4K citations · Full text

, , +14

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

Vân Anh Huynh‐Thu, Alexandre Irrthum, Louis Wehenkel et al. · PLoS ONE · 2010 · 2.3K citations · Full text

, , +13

1–5 of 1.7K

Authors

5.6K

  1. JQ
    John Quackenbush

    Dana-Farber Cancer Institute, United States

    19 publications · 737 citations

    17

    h-index

  2. SM
    Satoru Miyano

    The University of Tokyo, Japan

    20 publications · 1K citations

    17

    h-index

  3. FE
    Frank Emmert‐Streib

    Tampere University, Finland

    17 publications · 1K citations

    15

    h-index

  4. RB
    Richard Bonneau

    New York University, United States

    16 publications · 2.2K citations

    15

    h-index

  5. AC
    Andrea Califano

    Columbia University, United States

    16 publications · 5K citations

    14

    h-index

1–5 of 5.6K

Institutions

1.6K

  1. Harvard University

    Cambridge, United States

    29 h-index

    201 publications

    19.6K citations

  2. The University of Tokyo

    Tokyo, Japan

    27 h-index

    98 publications

    6.9K citations

  3. Centre National de la Recherche Scientifique

    Paris, France

    26 h-index

    119 publications

    5.2K citations

  4. Massachusetts Institute of Technology

    Cambridge, United States

    23 h-index

    86 publications

    14K citations

  5. University of Cambridge

    Cambridge, United Kingdom

    23 h-index

    100 publications

    10.1K citations

  6. Stanford University

    Stanford, United States

    22 h-index

    64 publications

    11.2K citations

  7. New York University

    New York, United States

    21 h-index

    107 publications

    9.7K citations

  8. Texas A&M University

    College Station, United States

    21 h-index

    86 publications

    4.6K citations

1–8 of 1.6K

Venues

  1. Bioinformatics

    210 publications · 22.2K citations

    65

    h-index

  2. BMC Bioinformatics

    112 publications · 8.3K citations

    40

    h-index

  3. PLoS Computational Biology

    69 publications · 4.8K citations

    38

    h-index

  4. PLoS ONE

    89 publications · 5.7K citations

    36

    h-index

  5. Nucleic Acids Research

    57 publications · 4.2K citations

    35

    h-index

1–5