Concepedia

Reference-based Metagenomics

Reference-Based Metagenomics is a computational approach in metagenomic analysis that belongs to the class of sequence alignment methods and is distinguished by its reliance on comparing sequencing reads against a curated database of reference genomes or genes to identify and quantify microbial community members.

96

Publications

39.6K

Citations

526

Authors

265

Institutions

Publications per year

2017–2026

62

Parents

Publications

96

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks, Michael Imelfort, Connor T. Skennerton et al. · Genome Research · 2015 · 12.8K citations · Full text

, , +17

Improved metagenomic analysis with Kraken 2

Derrick E. Wood, Jennifer Lu, Ben Langmead · Genome biology · 2019 · 7.1K citations · Full text

, , +11

Mash: fast genome and metagenome distance estimation using MinHash

Brian Ondov, Todd J. Treangen, Páll Melsted et al. · Genome biology · 2016 · 3.6K citations · Full text

, , +15

A framework for human microbiome research

A. Scott Durkin, Brandi L. Cantarel, Nicola Segata et al. · Nature · 2012 · 2.7K citations · Full text

, , +13

CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning

Alex Chklovski, Donovan H. Parks, Ben J. Woodcroft et al. · Nature Methods · 2023 · 1.4K citations

, , +17

1–5 of 96

Authors

526

  1. DH
    Donovan H. Parks

    The University of Queensland, Australia

    6 publications · 15.4K citations

    6

    h-index

  2. SK
    Sergey Koren

    National Human Genome Research Institute, United States

    6 publications · 4.3K citations

    6

    h-index

  3. PH
    Philip Hugenholtz

    The University of Queensland, Australia

    6 publications · 14.4K citations

    6

    h-index

  4. GW
    Gene W. Tyson

    The University of Queensland, Australia

    6 publications · 14.7K citations

    6

    h-index

  5. BJ
    Ben J. Woodcroft

    The University of Queensland, Australia

    5 publications · 2K citations

    5

    h-index

1–5 of 526

Institutions

265

  1. The University of Queensland

    Brisbane, Australia

    7 h-index

    26 publications

    69.4K citations

  2. National Human Genome Research Institute

    Bethesda, United States

    7 h-index

    16 publications

    9.4K citations

  3. Technical University of Denmark

    Kongens Lyngby, Denmark

    6 h-index

    30 publications

    20.8K citations

  4. Joint Genome Institute

    Berkeley, United States

    5 h-index

    40 publications

    18.3K citations

  5. National Institutes of Health

    Bethesda, United States

    5 h-index

    8 publications

    13.7K citations

  6. Queensland University of Technology

    Brisbane, Australia

    5 h-index

    19 publications

    6.6K citations

  7. Lawrence Berkeley National Laboratory

    Berkeley, United States

    5 h-index

    31 publications

    15.2K citations

  8. University of Maryland, College Park

    College Park, United States

    5 h-index

    15 publications

    3.5K citations

1–8 of 265

Venues

  1. Bioinformatics

    16 publications · 1.4K citations

    16

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 15 publications · 1.6K citations

    12

    h-index

  3. PLoS ONE

    10 publications · 644 citations

    11

    h-index

  4. Nature Communications

    6 publications · 654 citations

    6

    h-index

  5. Genome biology

    6 publications · 11.3K citations

    6

    h-index

1–5