Concepedia

CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning

Alex Chklovski, Donovan H. Parks, Ben J. Woodcroft, Gene W. Tyson

Nature Methods · 2023 · 1.4K citations · 31 references

DOI

Concepts

References

31

KEGG: Kyoto Encyclopedia of Genes and Genomes

Minoru Kanehisa · Nucleic Acids Research · 2000 · 39.2K citations · Full text

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KEGG: Kyoto Encyclopedia of Genes and Genomes

Hiroyuki Ogata, Susumu Goto, Kazushige Sato et al. · Nucleic Acids Research · 1999 · 32.4K citations · Full text

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Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt, Gwo-Liang Chen, Philip LoCascio et al. · BMC Bioinformatics · 2010 · 13.1K citations · Full text

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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks, Michael Imelfort, Connor T. Skennerton et al. · Genome Research · 2015 · 12.8K citations · Full text

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LightGBM: A Highly Efficient Gradient Boosting Decision Tree

Guolin Ke, Qi Meng, Thomas Finley et al. · HAL (Le Centre pour la Communication Scientifique Directe) · 2017 · 9.5K citations · Full text

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