Concepedia

Read Normalization

Read Normalization is a computational preprocessing method in transcriptome assembly that reduces sequencing depth bias by uniformly downsampling reads to a target coverage level, thereby minimizing redundancy while preserving transcript diversity.

66

Publications

26.4K

Citations

366

Authors

167

Institutions

Publications per year

2017–2026

26

Variants

Digital Normalization

Parents

Publications

66

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

Mihaela Pertea, Geo Pertea, Corina Antonescu et al. · Nature Biotechnology · 2015 · 15.5K citations · Full text

, , +10

Normalization of RNA-seq data using factor analysis of control genes or samples

Davide Risso, John Ngai, Terence P. Speed et al. · Nature Biotechnology · 2014 · 2.3K citations · Full text

, , +16

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

James Bullard, Elizabeth Purdom, Kasper D. Hansen et al. · BMC Bioinformatics · 2010 · 1.8K citations · Full text

, , +15

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

Marie‐Agnès Dillies, Andréa Rau, Julie Aubert et al. · Briefings in Bioinformatics · 2012 · 1.4K citations · Full text

, , +14

Biases in Illumina transcriptome sequencing caused by random hexamer priming

Kasper D. Hansen, Steven E. Brenner, Sandrine Dudoit · Nucleic Acids Research · 2010 · 755 citations · Full text

, , +16

1–5 of 66

Authors

366

  1. SD
    Sandrine Dudoit

    University of California, Berkeley, United States

    3 publications · 4.8K citations

    3

    h-index

  2. LP
    Lior Pachter

    University of California, Berkeley, United States

    2 publications · 41 citations

    2

    h-index

  3. WE
    Wolfgang Enard

    Ludwig-Maximilians-Universität München, Germany

    2 publications · 457 citations

    2

    h-index

  4. DL
    David Langenberger

    Leipzig University, Germany

    2 publications · 122 citations

    2

    h-index

  5. KD
    Kasper D. Hansen

    Johns Hopkins University, United States

    2 publications · 2.5K citations

    2

    h-index

1–5 of 366

Institutions

167

  1. University of California, Berkeley

    Berkeley, United States

    4 h-index

    14 publications

    18.7K citations

  2. Stanford University

    Stanford, United States

    4 h-index

    10 publications

    1.7K citations

  3. University of Southern California

    Los Angeles, United States

    3 h-index

    8 publications

    646 citations

  4. University of Copenhagen

    Copenhagen, Denmark

    3 h-index

    4 publications

    154 citations

  5. Tel Aviv University

    Tel Aviv, Israel

    3 h-index

    8 publications

    378 citations

  6. Saarland University

    Saarbrücken, Germany

    3 h-index

    6 publications

    84 citations

  7. Ludwig-Maximilians-Universität München

    Munich, Germany

    3 h-index

    12 publications

    2.3K citations

  8. Santa Fe Institute

    Santa Fe, United States

    2 h-index

    2 publications

    122 citations

1–8 of 167

Venues

  1. Nucleic Acids Research

    8 publications · 1.4K citations

    8

    h-index

  2. Bioinformatics

    8 publications · 403 citations

    8

    h-index

  3. BMC Bioinformatics

    8 publications · 2.2K citations

    8

    h-index

  4. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 6 publications · 154 citations

    6

    h-index

  5. Briefings in Bioinformatics

    3 publications · 1.5K citations

    3

    h-index

1–5