Marie‐Agnès Dillies

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

Marie‐Agnès Dillies, Andréa Rau, Julie Aubert et al. · Briefings in Bioinformatics · 2012 · 1.3K citations · Full text

Engineering, Genetics, Transcriptomics Technology +21

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

Hugo Varet, Loraine Brillet-Guéguen, Jean‐Yves Coppée et al. · PLoS ONE · 2016 · 1.3K citations · Full text

Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila

Holger Brüggemann, Arne Hagman, Matthieu Jules et al. · Cellular Microbiology · 2006 · 267 citations · Full text

Identification and characterization of the genetic changes responsible for the characteristic smooth‐to‐rough morphotype alterations of clinically persistent <i><scp>M</scp>ycobacterium abscessus</i>

Alexandre Pawlik, Guillaume Garnier, Mickael Orgeur et al. · Molecular Microbiology · 2013 · 180 citations

Engineering, Genetics, Bacteriology +20

Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses

Laurent Jourdren, Maria Bernard, Marie‐Agnès Dillies et al. · Bioinformatics · 2012 · 164 citations · Full text