Concepedia

Read Alignment For Transcriptomics

Read Alignment for Transcriptomics is a computational method that maps high-throughput sequencing reads to a reference transcriptome or genome to identify their precise origin, enabling the reconstruction and quantification of transcript structures in RNA-seq analyses.

82

Publications

33K

Citations

354

Authors

158

Institutions

Publications per year

2017–2026

43

Variants

Transcriptome Mapping

Parents

Publications

82

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

, , +14

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Mihaela Pertea, Daehwan Kim, Geo Pertea et al. · Nature Protocols · 2016 · 7.6K citations

, , +10

The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads

Yang Liao, Gordon K. Smyth, Wei Shi · Nucleic Acids Research · 2019 · 3.2K citations · Full text

, , +16

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

Nancy Stralis‐Pavese · Nature Biotechnology · 2014 · 1.1K citations · Full text

, , +17

Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads

Li Song, Liliana Florea · GigaScience · 2015 · 614 citations · Full text

, , +17

1–5 of 82

Authors

354

  1. MI
    Michael I. Love

    University of North Carolina at Chapel Hill, United States

    5 publications · 977 citations

    5

    h-index

  2. RP
    Rob Patro

    Stony Brook University, United States

    4 publications · 348 citations

    4

    h-index

  3. CK
    Carl Kingsford

    Carnegie Mellon University, United States

    4 publications · 374 citations

    4

    h-index

  4. LM
    Laraib Malik

    Stony Brook University, United States

    3 publications · 246 citations

    3

    h-index

  5. PM
    Páll Melsted

    University of Iceland, Iceland

    3 publications · 67 citations

    3

    h-index

1–5 of 354

Institutions

158

  1. Johns Hopkins University

    Baltimore, United States

    4 h-index

    11 publications

    81.3K citations

  2. Stony Brook University

    Stony Brook, United States

    4 h-index

    10 publications

    651 citations

  3. Carnegie Mellon University

    Pittsburgh, United States

    4 h-index

    7 publications

    554 citations

  4. University of North Carolina at Chapel Hill

    Chapel Hill, United States

    4 h-index

    4 publications

    486 citations

  5. Cold Spring Harbor Laboratory

    Cold Spring Harbor, United States

    3 h-index

    7 publications

    2K citations

  6. University of Maryland, College Park

    College Park, United States

    3 h-index

    8 publications

    14.6K citations

  7. Johns Hopkins Medicine

    Baltimore, United States

    3 h-index

    8 publications

    72K citations

  8. Illumina (United States)

    San Diego, United States

    3 h-index

    6 publications

    14.1K citations

1–8 of 158

Venues

  1. BMC Bioinformatics

    7 publications · 981 citations

    7

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 7 publications · 591 citations

    7

    h-index

  3. Methods in molecular biology

    Book series · 5 publications · 407 citations

    6

    h-index

  4. Bioinformatics

    6 publications · 319 citations

    6

    h-index

  5. PLoS ONE

    6 publications · 311 citations

    6

    h-index

1–5