Concepedia

Pam Matrices

PAM Matrix is a substitution matrix used in bioinformatics for scoring amino acid replacements in protein sequence alignments, derived from the estimation of point accepted mutations per 100 residues based on empirical observations of closely related proteins.

102

Publications

16.1K

Citations

382

Authors

185

Institutions

Publications per year

2017–2026

31

Variants

Point Accepted Mutation Matrices

Parents

Publications

102

The rapid generation of mutation data matrices from protein sequences

David T. Jones, William R. Taylor, Janet M. Thornton · Computer applications in the biosciences · 1992 · 7.1K citations

, , +10

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

Alexis Criscuolo, Simonetta Gribaldo · BMC Evolutionary Biology · 2010 · 1.7K citations · Full text

, , +13

Polyacrylamide degradation and its implications in environmental systems

Boya Xiong, Rebeca Dettam Loss, Derrick Shields et al. · npj Clean Water · 2018 · 525 citations · Full text

, , +17

Engineered Cpf1 variants with altered PAM specificities

Linyi Gao, David Cox, Winston X. Yan et al. · Nature Biotechnology · 2017 · 470 citations · Full text

, , +6

Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins

Kentaro Tomii, Minoru Kanehisa · Protein Engineering Design and Selection · 1996 · 372 citations · Full text

, , +17

1–5 of 102

Authors

382

  1. MA
    Margaret A. Riley

    Yale University, United States

    3 publications · 119 citations

    3

    h-index

  2. DW
    David W. Mount

    University of Arizona, United States

    3 publications · 133 citations

    3

    h-index

  3. TT
    Teruo Tsunoda

    Hitachi (Japan), Japan

    2 publications · 45 citations

    2

    h-index

  4. BS
    Britta Stoll

    Universität Ulm, Germany

    2 publications · 62 citations

    2

    h-index

  5. ON
    Osamu Nureki

    The University of Tokyo, Japan

    2 publications · 627 citations

    2

    h-index

1–5 of 382

Institutions

185

  1. Chinese Academy of Sciences

    Beijing, China

    3 h-index

    15 publications

    780 citations

  2. Marine Biological Laboratory

    Woods Hole, United States

    3 h-index

    3 publications

    119 citations

  3. North Carolina State University

    Raleigh, United States

    3 h-index

    13 publications

    570 citations

  4. Massachusetts Institute of Technology

    Cambridge, United States

    3 h-index

    7 publications

    2.3K citations

  5. Broad Institute

    Cambridge, United States

    3 h-index

    16 publications

    6K citations

  6. Harvard University

    Cambridge, United States

    3 h-index

    15 publications

    4.7K citations

  7. Southeast University

    Nanjing, China

    2 h-index

    4 publications

    92 citations

  8. Universität Ulm

    Ulm, Germany

    2 h-index

    13 publications

    460 citations

1–8 of 185

Venues

  1. Bioinformatics

    6 publications · 278 citations

    6

    h-index

  2. Nucleic Acids Research

    6 publications · 468 citations

    6

    h-index

  3. BMC Bioinformatics

    6 publications · 182 citations

    6

    h-index

  4. Journal of Applied Polymer Science

    4 publications · 108 citations

    4

    h-index

  5. Cold Spring Harbor Protocols

    3 publications · 133 citations

    3

    h-index

1–5