Concepedia

Homopolymer Error Correction

Homopolymer Error Correction is a computational method in genome assembly polishing that specifically identifies and rectifies sequencing errors occurring within homopolymer regions, where inaccurate base calls arise due to the repetitive nature of identical nucleotides in next-generation sequencing data.

20

Publications

3.5K

Citations

89

Authors

51

Institutions

Publications per year

2017–2026

10

Parents

Publications

20

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

Sergey Nurk, Brian P. Walenz, Arang Rhie et al. · Genome Research · 2020 · 834 citations · Full text

, , +17

Polypolish: Short-read polishing of long-read bacterial genome assemblies

Ryan R. Wick, Kathryn E. Holt · PLoS Computational Biology · 2022 · 733 citations · Full text

, , +17

The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies

Aleksey V. Zimin, Steven L. Salzberg · PLoS Computational Biology · 2020 · 435 citations · Full text

, , +16

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

André Gilles, Emese Meglécz, Nicolas Pech et al. · BMC Genomics · 2011 · 370 citations · Full text

, , +13

Improving PacBio Long Read Accuracy by Short Read Alignment

Kin Fai Au, Jason G. Underwood, L. Lee et al. · PLoS ONE · 2012 · 368 citations · Full text

, , +13

1–5 of 20

Authors

89

  1. SK
    Sergey Koren

    National Human Genome Research Institute, United States

    3 publications · 1.1K citations

    3

    h-index

  2. SL
    Steven L. Salzberg

    Johns Hopkins University, United States

    2 publications · 450 citations

    2

    h-index

  3. AM
    Adam M. Phillippy

    National Human Genome Research Institute, United States

    2 publications · 928 citations

    2

    h-index

  4. GA
    Glennis A. Logsdon

    University of Washington, United States

    2 publications · 928 citations

    2

    h-index

  5. MR
    Mitchell R. Vollger

    University of Washington, United States

    2 publications · 928 citations

    2

    h-index

1–5 of 89

Institutions

51

  1. National Institutes of Health

    Bethesda, United States

    3 h-index

    11 publications

    4.9K citations

  2. Pacific Biosciences (United States)

    Menlo Park, United States

    3 h-index

    4 publications

    1.7K citations

  3. University of Washington

    Seattle, United States

    3 h-index

    15 publications

    2.9K citations

  4. National Human Genome Research Institute

    Bethesda, United States

    3 h-index

    11 publications

    4.9K citations

  5. Monash University

    Melbourne, Australia

    2 h-index

    4 publications

    1.5K citations

  6. Howard Hughes Medical Institute

    Chevy Chase, United States

    2 h-index

    2 publications

    928 citations

  7. Johns Hopkins University

    Baltimore, United States

    2 h-index

    4 publications

    900 citations

  8. University of California, Santa Cruz

    Santa Cruz, United States

    2 h-index

    2 publications

    928 citations

1–8 of 51

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 3 publications · 127 citations

    4

    h-index

  2. PLoS ONE

    3 publications · 547 citations

    3

    h-index

  3. BMC Bioinformatics

    3 publications · 114 citations

    3

    h-index

  4. PLoS Computational Biology

    2 publications · 1.2K citations

    2

    h-index

  5. BMC Genomics

    2 publications · 439 citations

    2

    h-index

1–5