Kathryn E. Holt

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

Ryan R. Wick, Louise M. Judd, Claire L. Gorrie et al. · PLoS Computational Biology · 2017 · 8.8K citations · Full text

Life Sciences, Bioinformatics, Microbiology +15

Performance of neural network basecalling tools for Oxford Nanopore sequencing

Ryan R. Wick, Louise M. Judd, Kathryn E. Holt · Genome biology · 2019 · 3.3K citations · Full text

Life Sciences, Bioinformatics, Biology +15

Bandage: interactive visualization of <i>de novo</i> genome assemblies

Ryan R. Wick, Mark B. Schultz, Justin Zobel et al. · Bioinformatics · 2015 · 3.2K citations · Full text

Life Sciences, Bioinformatics, Visualization +13

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in <i>Klebsiella pneumoniae</i> , an urgent threat to public health

Kathryn E. Holt, Heiman Wertheim, Ruth N. Zadoks et al. · Proceedings of the National Academy of Sciences · 2015 · 1.3K citations · Full text

Life Sciences, Infectious Diseases, Microbiology +17

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

Michael Inouye, Harriet Dashnow, Lesley-Ann Raven et al. · Genome Medicine · 2014 · 1.1K citations · Full text

Life Sciences, Genetics, Microbiology +17