Concepedia

Assembly Benchmarking

Assembly Benchmarking is a systematic evaluation framework within bioinformatics that, as a singular academic concept, belongs to the class of assessment methodologies by virtue of providing standardized metrics and comparative analyses to quantify the accuracy, completeness, and contiguity of genome assemblies generated through Overlap-Layout-Consensus Assembly techniques.

46

Publications

7.6K

Citations

273

Authors

119

Institutions

Publications per year

2017–2026

29

Parents

Publications

46

Versatile genome assembly evaluation with QUAST-LG

Alla Mikheenko, Andrey D. Prjibelski, Vladislav Saveliev et al. · Bioinformatics · 2018 · 1.6K citations · Full text

, , +16

Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

Shujun Ou, Weija Su, Yi Liao et al. · Genome biology · 2019 · 1.5K citations · Full text

, , +17

Trycycler: consensus long-read assemblies for bacterial genomes

Ryan R. Wick, Louise M. Judd, Louise Cerdeira et al. · Genome biology · 2021 · 556 citations · Full text

, , +16

Assemblathon 1: A competitive assessment of de novo short read assembly methods

Dent Earl, Keith Bradnam, John St. John et al. · Genome Research · 2011 · 539 citations · Full text

, , +15

compleasm: a faster and more accurate reimplementation of BUSCO

Neng Huang, Heng Li · Bioinformatics · 2023 · 347 citations · Full text

, , +14

1–5 of 46

Authors

273

  1. KE
    Kathryn E. Holt

    The University of Melbourne, Australia

    6 publications · 1.2K citations

    6

    h-index

  2. RR
    Ryan R. Wick

    The University of Melbourne, Australia

    6 publications · 1.2K citations

    6

    h-index

  3. MB
    Matthew B. Hufford

    Iowa State University, United States

    4 publications · 1.7K citations

    4

    h-index

  4. CN
    Candice N. Hirsch

    University of Minnesota, United States

    2 publications · 1.6K citations

    2

    h-index

  5. SO
    Shujun Ou

    Iowa State University, United States

    2 publications · 1.6K citations

    2

    h-index

1–5 of 273

Institutions

119

  1. London School of Hygiene & Tropical Medicine

    London, United Kingdom

    6 h-index

    6 publications

    1.2K citations

  2. Monash University

    Melbourne, Australia

    6 h-index

    24 publications

    5.9K citations

  3. Iowa State University

    Ames, United States

    5 h-index

    17 publications

    7.5K citations

  4. Cold Spring Harbor Laboratory

    Cold Spring Harbor, United States

    4 h-index

    7 publications

    4.1K citations

  5. University of Chinese Academy of Sciences

    Beijing, China

    3 h-index

    10 publications

    614 citations

  6. University of Maryland, College Park

    College Park, United States

    3 h-index

    7 publications

    2K citations

  7. Chinese Academy of Sciences

    Beijing, China

    3 h-index

    16 publications

    749 citations

  8. Agricultural Research Service

    Washington, United States

    3 h-index

    7 publications

    464 citations

1–8 of 119

Venues

  1. Bioinformatics

    5 publications · 2.2K citations

    5

    h-index

  2. F1000Research

    5 publications · 672 citations

    5

    h-index

  3. Genome biology

    5 publications · 2.4K citations

    5

    h-index

  4. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 4 publications · 196 citations

    4

    h-index

  5. PLoS ONE

    3 publications · 158 citations

    3

    h-index

1–5