Evolution and clinical impact of co-occurring genetic alterations in advanced-stage EGFR-mutant lung cancers

Collin M. Blakely, Thomas B.K. Watkins, Wei Wu, +26

Nature Genetics

Co-occurring Genetic AlterationsOncologySomatic VariantMedicineGenetics +8

Assemblathon 1: A competitive assessment of de novo short read assembly methods

Dent Earl, Keith Bradnam, John St. John, +68

Genome Research

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage

H. Bradley Shaffer, Patrick Minx, Daniel E. Warren, +55

Genome biology

Inference of transcription factor binding from cell-free DNA enables tumor subtype prediction and early detection

Peter Ulz, Samantha Perakis, Qing Zhou, +18

Nature Communications

Genomic Evidence for Island Population Conversion Resolves Conflicting Theories of Polar Bear Evolution

James A. Cahill, Richard E. Green, Tara L. Fulton, +8

PLoS Genetics

Genomic EvidenceComparative GenomicsGeneticsGenomicsBiological Evolution +15

Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA

Nathan Wan, David S. Weinberg, Tzu‐Yu Liu, +27

BMC Cancer

Genome modeling and design across all domains of life with Evo 2

Garyk Brixi, Matthew G. Durrant, Michael Poli, +42

GeneticsMolecular BiologyGenomicsAbstract AllNew Biological Systems +15

Cactus Graphs for Genome Comparisons

Benedict Paten, Mark Diekhans, Dent Earl, +4

Journal of Computational Biology

Synthesis and Characterization of Discrete Luminescent Erbium-Doped Silicon Nanocrystals

John St. John, Jeffery L. Coffer, Yandong Chen, +1

Journal of the American Chemical Society

Optical MaterialsEngineeringLuminescent GlassDoped NanoparticlesOptoelectronic Devices +17

Porosified Silicon Wafer Structures Impregnated With Platinum Anti-Tumor Compounds: Fabrication, Characterization, and Diffusion Studies

Xin Li, John St. John, Jeffery L. Coffer, +5

Biomedical Microdevices