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Genome biology

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

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Nature Genetics

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Microbial Genomics

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Vanessa Wong, Stephen Baker, Thomas R. Connor, +80

Nature Communications

Genome-scale rates of evolutionary change in bacteria

Sebastián Duchêne, Kathryn E. Holt, François‐Xavier Weill, +5

Microbial PathogensComparative GenomicsBacterial PathogensMicrobial EvolutionPhylogenetic Analysis +14

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data

Jane Hawkey, Mohammad Hamidian, Ryan R. Wick, +4

BMC Genomics

Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198

Jane Hawkey, Simon Le Hello, Benoît Doublet, +8

Microbial Genomics

Antimicrobial Resistance GeneHealth SciencesMolecular EpidemiologyDrug ResistanceGenetics +12

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

Jane Hawkey, Kalani Paranagama, Kate S. Baker, +12

Nature Communications

Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection

Jane Hawkey, David B. Ascher, Louise M. Judd, +7

Microbial Genomics

Species interactions constrain adaptation and preserve ecological stability in an experimental microbial community

Jake Barber, Luke C Nicholson, Laura C. Woods, +5

The ISME Journal