Microbial Genomics

Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification

Oliver Schwengers, Lukas Jelonek, Marius Alfred Dieckmann et al. · 2021 · 1.3K citations · Full text

Life Sciences, Bioinformatics, Microbiology +16

SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

Andrew J. Page, Ben Taylor, Aidan Delaney et al. · 2016 · 1.3K citations · Full text

Life Sciences, Bioinformatics, Genetics +15

MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies

James A. Robertson, John J. Nash · 2018 · 978 citations · Full text

Life Sciences, Genetics, Microbiology +17

Completing bacterial genome assemblies with multiplex MinION sequencing

Ryan R. Wick, Louise M. Judd, Claire L. Gorrie et al. · 2017 · 961 citations · Full text

Life Sciences, Genetics, Microbiology +13

Microreact: visualizing and sharing data for genomic epidemiology and phylogeography

Silvia Argimón, Khalil Abudahab, Richard Goater et al. · 2016 · 837 citations · Full text

Computing, Bioinformatics, Visualization +13