A genome-wide atlas of co-essential modules assigns function to uncharacterized genes

Michael Wainberg, Roarke A. Kamber, Akshay Balsubramani, +14

Nature Genetics

BiologyBioinformaticsGenome-wide AtlasCo-essential ModulesGenome Study +13

Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart disease

Mohamed Ameen, Laksshman Sundaram, Mengcheng Shen, +16

Cell

CardiomyopathyDevelopmental BiologyCardiac ReprogrammingMorphogenesisCongenital Heart Defect +7

Semantically Decomposing the Latent Spaces of Generative Adversarial\n Networks

Chris Donahue, Zachary C. Lipton, Akshay Balsubramani, +1

arXiv (Cornell University)

Domain-adaptive neural networks improve cross-species prediction of transcription factor binding

Kelly Cochran, Divyanshi Srivastava, Avanti Shrikumar, +4

Genome Research

Deep learning the cis-regulatory code of chromatin dynamics during cellular reprogramming

Surag Nair, Mohamed Ameen, Laksshman Sundaram, +8

CodonBERT large language model for mRNA vaccines

Sizhen Li, Saeed Moayedpour, Ruijiang Li, +24

Genome Research

Structured PredictionEngineeringMachine LearningMrna-based VaccinesMrna Vaccines +19

Semantically Decomposing the Latent Spaces of Generative Adversarial Networks

Chris Donahue, Zachary C. Lipton, Akshay Balsubramani, +1

arXiv (Cornell University)

Artificial IntelligenceEngineeringMachine LearningBiometricsGenerative System +16

CodonBERT: Large Language Models for mRNA design and optimization

Sizhen Li, Saeed Moayedpour, Ruijiang Li, +22

Structured PredictionEngineeringMachine LearningMultilingual PretrainingLarge Language Model +19

The Fast Convergence of Incremental PCA

Akshay Balsubramani, Sanjoy Dasgupta, Yoav Freund

arXiv (Cornell University)

Numerical AnalysisUnknown Covariance AEngineeringData ScienceMatrix Analysis +13

Representations of lipid nanoparticles using large language models for transfection efficiency prediction

Saeed Moayedpour, Jonathan Broadbent, Saleh Riahi, +12

Bioinformatics