DeepHiC: A generative adversarial network for enhancing Hi-C data resolution

Hao Hong, Shuai Jiang, Hao Li, +12

PLoS Computational Biology

Convolutional Neural NetworkEngineeringMachine LearningGeneticsChromatin Loop Detection +19

New insights on human essential genes based on integrated analysis and the construction of the HEGIAP web-based platform

Hebing Chen, Zhuo Zhang, Shuai Jiang, +7

Briefings in Bioinformatics

Integrated AnalysisGeneticsNew InsightsGenomicsGene Regulatory Network +25

TOXRIC: a comprehensive database of toxicological data and benchmarks

Lianlian Wu, Bowei Yan, Junshan Han, +4

Nucleic Acids Research

Toxic EffectsComprehensive DatabaseBioinformatics DatabaseDrug ResistanceCompound Toxicology +22

CodonBERT large language model for mRNA vaccines

Sizhen Li, Saeed Moayedpour, Ruijiang Li, +24

Genome Research

Structured PredictionEngineeringMachine LearningMrna-based VaccinesMrna Vaccines +19

Stable H3K4me3 is associated with transcription initiation during early embryo development

Xin Huang, Xudong Gao, Wanying Li, +8

Bioinformatics

CodonBERT: Large Language Models for mRNA design and optimization

Sizhen Li, Saeed Moayedpour, Ruijiang Li, +22

Structured PredictionEngineeringMachine LearningMultilingual PretrainingLarge Language Model +19

Evidential deep learning-based drug-target interaction prediction

Yanpeng Zhao, Yuting Xing, Yixin Zhang, +16

Nature Communications

Exploration of prognosis-related microRNA and transcription factor co-regulatory networks across cancer types

Ruijiang Li, Shuai Jiang, Wanying Li, +7

RNA Biology

PathologyTarget GenesCancer TypesCancer BiologyTumor Biology +15

Ketoprofen resolution by enzymatic estirification and hydrolysis of the ester product

Jin Wu, Hou Ran Low, Yujun Leng, +4

Biotechnology and Bioprocess Engineering

Pharmaceutical SciencePharmaceutical ResearchEster ProductBiochemistryEnzymatic Estirification +7

CMTCN: a web tool for investigating cancer-specific microRNA and transcription factor co-regulatory networks

Ruijiang Li, Hebing Chen, Shuai Jiang, +8

PeerJ

EngineeringGeneticsPathologyGene Regulatory NetworkGene Expression Profiling +18