Concepedia

RNA–ligand interaction scoring via data perturbation and augmentation modeling

Hongli Ma, Letian Gao, Yunfan Jin, Jianwei Ma, Yilan Bai, Xiaofan Liu, Pengfei Bao, Zhenjiang Zech Xu, Zhi John Lu

Nature Computational Science · 2025 · 12 citations · 55 references

DOI

Concepts

References

55

The Protein Data Bank

Helen M. Berman · Nucleic Acids Research · 2000 · 39.8K citations

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li, Adam Godzik · Bioinformatics · 2006 · 12.1K citations · Full text

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AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings

Jérôme Eberhardt, Diogo Santos‐Martins, Andreas F. Tillack et al. · Journal of Chemical Information and Modeling · 2021 · 6.7K citations · Full text

, , +15

LigPlot+: Multiple Ligand–Protein Interaction Diagrams for Drug Discovery

Roman A. Laskowski, Mark B. Swindells · Journal of Chemical Information and Modeling · 2011 · 6.5K citations

, , +17

Infernal 1.1: 100-fold faster RNA homology searches

Eric P. Nawrocki, Sean R. Eddy · Bioinformatics · 2013 · 3.9K citations · Full text

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