Concepedia

Scoring Function Optimization

Scoring Function Optimization is a computational methodology within protein-ligand docking that systematically refines the mathematical model used to predict binding affinity in order to enhance the accuracy of identifying optimal ligand conformations.

337

Publications

71.3K

Citations

1.2K

Authors

466

Institutions

Publications per year

2017–2026

101

Parents

Publications

337

AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading

Oleg Trott, Arthur J. Olson · Journal of Computational Chemistry · 2009 · 37.1K citations · Full text

, , +17

Extra Precision Glide:  Docking and Scoring Incorporating a Model of Hydrophobic Enclosure for Protein−Ligand Complexes

Richard A. Friesner, Robert B. Murphy, Matthew P. Repasky et al. · Journal of Medicinal Chemistry · 2006 · 6.9K citations

, , +16

Empirical Scoring Functions for Advanced Protein−Ligand Docking with PLANTS

Oliver Korb, Thomas Stützle, Thomas E. Exner · Journal of Chemical Information and Modeling · 2009 · 1.3K citations

, , +14

Further development and validation of empirical scoring functions for structure-based binding affinity prediction

Renxiao Wang, Luhua Lai, Shaomeng Wang · Journal of Computer-Aided Molecular Design · 2002 · 1.2K citations · Full text

, , +16

Lessons Learned in Empirical Scoring with smina from the CSAR 2011 Benchmarking Exercise

David Ryan Koes, Matthew P. Baumgartner, Carlos J. Camacho · Journal of Chemical Information and Modeling · 2013 · 1.2K citations · Full text

, , +17

1–5 of 337

Authors

1.2K

  1. AŠ
    Andrej Šali

    University of California, San Francisco, United States

    6 publications · 934 citations

    6

    h-index

  2. TL
    Thomas Lengauer

    Max Planck Institute for Informatics, Germany

    5 publications · 190 citations

    5

    h-index

  3. WF
    Walter Filgueira de Azevedo

    Pontifícia Universidade Católica do Rio Grande do Sul, Brazil

    5 publications · 288 citations

    5

    h-index

  4. SL
    Shide Liang

    University of Nebraska–Lincoln, United States

    5 publications · 274 citations

    5

    h-index

  5. HJ
    Hualiang Jiang

    Shanghai Institute of Materia Medica, China

    5 publications · 183 citations

    5

    h-index

1–5 of 1.2K

Institutions

466

  1. Chinese Academy of Sciences

    Beijing, China

    13 h-index

    75 publications

    2.4K citations

  2. Centre National de la Recherche Scientifique

    Paris, France

    11 h-index

    21 publications

    1.7K citations

  3. University of California, San Francisco

    San Francisco, United States

    10 h-index

    41 publications

    10.2K citations

  4. Shanghai Institute of Materia Medica

    Pudong, China

    8 h-index

    63 publications

    2.4K citations

  5. Stanford University

    Stanford, United States

    7 h-index

    22 publications

    881 citations

  6. Sanofi (Germany)

    Frankfurt am Main, Germany

    6 h-index

    21 publications

    792 citations

  7. Howard Hughes Medical Institute

    Chevy Chase, United States

    6 h-index

    17 publications

    1.5K citations

  8. Dalian University of Technology

    Dalian, China

    6 h-index

    29 publications

    1.1K citations

1–8 of 466

Venues

  1. Journal of Chemical Information and Modeling

    JCIM · 47 publications · 5.6K citations

    28

    h-index

  2. Proteins Structure Function and Bioinformatics

    26 publications · 2.9K citations

    19

    h-index

  3. Bioinformatics

    17 publications · 1.1K citations

    15

    h-index

  4. Journal of Computational Chemistry

    10 publications · 37.8K citations

    10

    h-index

  5. Journal of Computer-Aided Molecular Design

    10 publications · 3.1K citations

    10

    h-index

1–5