Concepedia

Integrative genome-centric metagenomics for surface water surveillance: Elucidating microbiomes, antimicrobial resistance, and their associations

Xinyang Huang, Magaly Toro, Angélica Reyes-Jara, Andrea I. Moreno‐Switt, Aiko D. Adell, Celso José Bruno de Oliveira, Raquel Regina Bonelli, Sebastián Gutiérrez, Francisca P. Álvarez, Alan Douglas de Lima Rocha,

Water Research · 2024 · 10 citations · 56 references

DOI

Concepts

References

56

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations

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Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

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Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price, Paramvir Dehal, Adam P. Arkin · PLoS ONE · 2010 · 16K citations · Full text

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Twelve years of SAMtools and BCFtools

Petr Danecek, James Bonfield, Jennifer Liddle et al. · GigaScience · 2021 · 15.9K citations · Full text

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