Molecular Horticulture · 2024 · 11 citations · 67 references
Life SciencesBiochemistryMolecular BiologyGene ExpressionMetabolismPlant Molecular BiologyCold Stress PhysiologyFruit AnatomyFruit BiochemistryFruit GeneticsFruit PhysiologyCold Storage RegimeConjoint AnalysisExperimental ValidationFruit Stress BiochemistryMolecular Regulation Of Fruit DevelopmentPostharvest Cold StoragePromoter-promoter InteractionsRegulators
Abstract Putrescine plays a role in superficial scald development during the cold storage of pear fruit. However, the molecular mechanism behind this phenomenon has not been un-fully clarified until recently. In this study, a conjoint analysis of metabolites and gene expression profiles in the putrescine-metabolic pathway of P. bretschneideri Rehd. fruit followed by experimental validation revealed that PbrADC1, forming a homodimer in the chloroplast, was involved in putrescine biosynthesis and thus fruit chilling resistance. Additionally, the substrate-binding residue Cys 546 in PbrADC1, whose activity was modified by H 2 O 2 , played a crucial role in arginine decarboxylation into agmatine. Through a combined analysis of the distribution of cis -acting elements in the PbrADC1 promoter as well as the expression profiles of related transcription factors (TFs), several TFs were identified as upstream regulators of PbrADC1 gene. Further investigation revealed that the nuclear PbrWRKY62 could directly bind to the W-box elements in the PbrADC1 promoter, activate its expression, enhance putrescine accumulation, and thus increase fruit chilling tolerance. In conclusion, our results suggest that the PbrWRKY62-PbrADC1 module is involved in the development of superficial scald in P. bretschneideri Rehd. fruit via regulating putrescine biosynthesis. Consequently, these findings could serve as valuable genetic resources for breeding scald-resistant pear fruit. Graphical Abstract
67
Circos: An information aesthetic for comparative genomics
Martin Krzywinski, Jacqueline E. Schein, İnanç Birol et al. · Genome Research · 2009 · 11.9K citations · Full text
Jalview Version 2—a multiple sequence alignment editor and analysis workbench
Andrew Waterhouse, James B Procter, David Martin et al. · Bioinformatics · 2009 · 10.9K citations · Full text
Phytozome: a comparative platform for green plant genomics
David Goodstein, Shengqiang Shu, Russell W. Howson et al. · Nucleic Acids Research · 2011 · 5.8K citations · Full text