Nature Communications · 2024 · 25 citations · 35 references
Life SciencesBiochemistryMolecular BiologyProtein FoldingProtein-protein InteractionsStructural BiologyAmyloid FormationMolecular ChaperonesProtein AggregationProtein Folding PathwaysProtein MisfoldingProtein StructureAggregation HotspotsAmyloid Beta AggregationAmyloid Beta PeptidesAmyloid Fibril FormationAmyloid Fibril StructureAmyloid FibrilsAmyloid StructureAutocatalytic Reactions
Protein misfolding can generate toxic intermediates, which underlies several devastating diseases, such as Alzheimer's disease (AD). The surface of AD-associated amyloid-β peptide (Aβ) fibrils has been suggested to act as a catalyzer for self-replication and generation of potentially toxic species. Specifically tailored molecular chaperones, such as the BRICHOS protein domain, were shown to bind to amyloid fibrils and break this autocatalytic cycle. Here, we identify a site on the Aβ42 fibril surface, consisting of three C-terminal β-strands and particularly the solvent-exposed β-strand stretching from residues 26-28, which is efficiently sensed by a designed variant of Bri2 BRICHOS. Remarkably, while only a low amount of BRICHOS binds to Aβ42 fibrils, fibril-catalyzed nucleation processes are effectively prevented, suggesting that the identified site acts as a catalytic aggregation hotspot, which can specifically be blocked by BRICHOS. Hence, these findings provide an understanding how toxic nucleation events can be targeted by molecular chaperones.
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Highly accurate protein structure prediction with AlphaFold
John Jumper, Alexander Pritzel, Tim Green et al. · Nature · 2021 · 45.2K citations · Full text
NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy
Woonghee Lee, Marco Tonelli, John L. Markley · Bioinformatics · 2014 · 2.2K citations · Full text