Molecular Microbiology · 2022 · 14 citations · 83 references
Life SciencesMicrobiologyMolecular BiologyGene ExpressionMicrobial PathogenesisSignal TransductionBacterial Gene RegulationBacterial PathogenesisMicrobial ProteomicsPost-translational RegulationTranslation RegulationTranslational RegulationGene Regulation In BacteriaGlobal Gene RegulationGlobal Transcriptional ControlGlobal Transcriptional RegulationProkaryotic Translation RegulationProtein Abundance AnalysisProtein Abundance ProfilingProtein Production
C-di-GMP signaling can directly influence bacterial behavior by affecting the functionality of c-di-GMP-binding proteins. In addition, c-di-GMP can exert a global effect on gene transcription or translation, for example, via riboswitches or by binding to transcription factors. In this study, we investigated the effects of changes in intracellular c-di-GMP levels on gene expression and protein production in the opportunistic pathogen Pseudomonas aeruginosa. We induced c-di-GMP production via an ectopically introduced diguanylate cyclase and recorded the transcriptional, translational as well as proteomic profile of the cells. We demonstrate that rising levels of c-di-GMP under growth conditions otherwise characterized by low c-di-GMP levels caused a switch to a non-motile, auto-aggregative P. aeruginosa phenotype. This phenotypic switch became apparent before any c-di-GMP-dependent role on transcription, translation, or protein abundance was observed. Our results suggest that rising global c-di-GMP pools first affects the motility phenotype of P. aeruginosa by altering protein functionality and only then global gene transcription.
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Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text