Food Research International · 2022 · 29 citations · 44 references
AgricultureFood ScienceMicrobiologyEnvironmental MicrobiologyFood MicrobiologyVegetable ProcessingBacterial EcologyEnvironmental BacteriologyMicrobial ContaminationMicrobial Ecology Of FoodsMicrobial Food SafetyVegetable MicrobiologyBacterial Community DynamicsBacterial Community EcologyBacterial Spoilage Of VegetablesFresh-cut Produce MicrobiologyFresh-cut Vegetable MicrobiologyMicrobial Ecology Of VegetablesMicrobial Enumeration In Vegetables
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Patrick D. Schloss, Sarah L. Westcott, Thomas Ryabin et al. · Applied and Environmental Microbiology · 2009 · 21.8K citations · Full text
UPARSE: highly accurate OTU sequences from microbial amplicon reads
R. C. Edgar · Nature Methods · 2013 · 17.3K citations
FLASH: fast length adjustment of short reads to improve genome assemblies
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UCHIME improves sensitivity and speed of chimera detection
R. C. Edgar, Brian J. Haas, José C. Clemente et al. · Bioinformatics · 2011 · 15.5K citations · Full text
Life Sciences, Biology, Microbiology +17