Microbiology Resource Announcements · 2021 · 28 citations · 11 references
Life SciencesBioinformaticsMicrobiologyGenome AssemblyGenomicsMetagenomicsComparative MetagenomicsMetagenome AssemblyMetagenomic AnalysisShotgun Metagenomic SequencingShotgun MetagenomicsDe Novo MetagenomicsMetagenome-assembled GenomesMetagenomic AssemblyPseudomonas SpeciesShotgun Metagenome Assembly
The de novo metagenome assembly for C1-TPA is 68,577,389 bp long spread over 10,108 contigs, while that of C3-TPA is 55,517,929 bp distributed over 9,415 contigs. A total of 8 metagenome-assembled genomes (MAGs) were extracted from C1-TPA, and 10 were extracted from C3-TPA. Both samples have a Flavobacterium sp. and a Pseudomonas sp. in common among their bacterial communities.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
NCBI prokaryotic genome annotation pipeline
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metaSPAdes: a new versatile metagenomic assembler
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