Microorganisms · 2019 · 36 citations · 35 references
Veterinary MedicineInfectious DiseasesPathobiologyInfectious Disease PathologyMolecular VirologyVirologyAnimal Infectious DiseasesAnimal VirusesViral Diseases Of WildlifeViral InfectionsViral PathogenesisViral ZoonosesAnimal Viral PathogenesisExperimental Animal Models Of Viral InfectionHemorrhagic Viral DiseaseHerpesviruses In WildlifeHost Protease-mediated Viral Protein CleavageLate Viral GenesViral ProteasesVirus Characterization
Elephant endotheliotropic herpesvirus (EEHV) can cause a devastating haemorrhagic disease in young Asian elephants worldwide. Here, we report the death of two young Asian elephants after suffering from acute haemorrhagic disease due to EEHV-1A infection. We detected widespread distribution of EEHV-1A in various organs and tissues of the infected elephants. Enveloped viral particles accumulated within and around cytoplasmic electron-dense bodies in hepatic endothelial cells were detected. Attempts to isolate the virus on different cell cultures showed limited virus replication; however, late viral protein expression was detected in infected cells. We further showed that glycoprotein B (gB) of EEHV-1A possesses a conserved cleavage site Arg-X-Lys/Arg-Arg that is targeted by the cellular protease furin, similar to other members of the Herpesviridae. We have determined the complete 180 kb genome sequence of EEHV-1A isolated from the liver by next-generation sequencing and de novo assembly. As virus isolation in vitro has been unsuccessful and limited information is available regarding the function of viral proteins, we have attempted to take the initial steps in the development of suitable cell culture system and virus characterization. In addition, the complete genome sequence of an EEHV-1A in Europe will facilitate future studies on the epidemiology and diagnosis of EEHV infection in elephants.
35
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Bruce J. Walker, Thomas Abeel, Terrance Shea et al. · PLoS ONE · 2014 · 10.2K citations · Full text
Ragout—a reference-assisted assembly tool for bacterial genomes
Mikhail Kolmogorov, Brian J. Raney, Benedict Paten et al. · Bioinformatics · 2014 · 217 citations · Full text