Science Immunology · 2017 · 57 citations · 34 references
Life SciencesImmunologyPathologyAutoimmunityImmunogeneticsImmunopathologyB Cell BiologyHumoral ImmunityImmunoglobulin Gene RearrangementLymphocyte DevelopmentSomatic HypermutationSystemic SclerosisAntibody Repertoire AnalysisAntibody Repertoire DevelopmentAntibody Repertoire SequencingB Cell Repertoire DiversityB Cell Repertoire FormationB-cell DisordersB-cell Repertoire AnalysisImmunoglobulin Heavy Chain Rearrangement
) proportion with reduced mutation loads and an expanded proportion of highly antibody-secreting cells. Disease signatures pertaining to IGHV2-5 segment usage, IgD proportions, and mutation loads were temporarily reversed after B cell depletion. Analyzing the time course of B cell depletion, we find that the kinetics of naïve replenishment are predictable from baseline measurements alone, that release of plasma cells into the periphery can precede naïve replenishment, and that modes of B cell receptor diversity are highly elastic. Our findings reveal humoral immune signatures of SSc-PAH and uncover determinism in the effects of B cell depletion on the antibody repertoire.
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Snakemake—a scalable bioinformatics workflow engine
Johannes Köster, Sven Rahmann · Bioinformatics · 2012 · 3.1K citations