Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data

Namita T. Gupta, Jason A. Vander Heiden, Mohamed Uduman, +3

Bioinformatics

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires

Jason A. Vander Heiden, Gur Yaari, Mohamed Uduman, +5

Bioinformatics

Personal neoantigen vaccines induce persistent memory T cell responses and epitope spreading in patients with melanoma

Zhuting Hu, Donna Leet, Rosa Lundbye Allesøe, +38

Nature Medicine

VaccinationTumor ImmunologyEpitope SpreadingCancer ImmunosurveillancePersonal Neoantigen Vaccines +9

Models of Somatic Hypermutation Targeting and Substitution Based on Synonymous Mutations from High-Throughput Immunoglobulin Sequencing Data

Gur Yaari, Jason A. Vander Heiden, Mohamed Uduman, +8

Frontiers in Immunology

Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles

Daniel Gadala-Maria, Gur Yaari, Mohamed Uduman, +1

Proceedings of the National Academy of Sciences

Quantifying selection in high-throughput Immunoglobulin sequencing data sets

Gur Yaari, Mohamed Uduman, Steven H. Kleinstein

Nucleic Acids Research

Antigen-driven SelectionGeneticsImmunologyGenomicsHigh Throughput Sequencing +16

High-resolution antibody dynamics of vaccine-induced immune responses

Uri Laserson, François Vigneault, Daniel Gadala-Maria, +18

Proceedings of the National Academy of Sciences

Angiosarcoma patients treated with immune checkpoint inhibitors: a case series of seven patients from a single institution

Vaia Florou, Andrew E. Rosenberg, Eric Wieder, +7

Journal for ImmunoTherapy of Cancer

Mutation-Derived Neoantigens for Cancer Immunotherapy

John C. Castle, Mohamed Uduman, Simarjot Pabla, +2

Frontiers in Immunology

Spatiotemporal segregation of human marginal zone and memory B cell populations in lymphoid tissue

Yuan Zhao, Mohamed Uduman, Jacqueline H. Y. Siu, +23

Nature Communications