Johannes Köster

Snakemake—a scalable bioinformatics workflow engine

Johannes Köster, Sven Rahmann · Bioinformatics · 2012 · 3.1K citations

Computing, Bioinformatics, Biomedical Informatics +9

Sustainable data analysis with Snakemake

Felix Mölder, Kim Philipp Jablonski, Brice Letcher et al. · F1000Research · 2021 · 855 citations · Full text

Computing, Computer Science, Data Management +12

Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR

Wei Li, Johannes Köster, Han Xu et al. · Genome biology · 2015 · 585 citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

The Public Repository of Xenografts Enables Discovery and Randomized Phase II-like Trials in Mice

Elizabeth C. Townsend, Mark A. Murakami, Alexandra Christodoulou et al. · Cancer Cell · 2016 · 304 citations · Full text

Medicine, Biomedical Sciences, Drug Discovery +6

VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis

MacIntosh Cornwell, Mahesh Vangala, Len Taing et al. · BMC Bioinformatics · 2018 · 232 citations · Full text

Life Sciences, Biology, Molecular Biology +14