Concepedia

Simultaneous quantification of protein–DNA contacts and transcriptomes in single cells

Koos Rooijers, Corina M. Markodimitraki, Franka J. Rang, Sandra S. de Vries, Alex Chialastri, Kim L. de Luca, Dylan Mooijman, Siddharth S. Dey, Jop Kind

Nature Biotechnology · 2019 · 119 citations · 47 references

DOI

Concepts

References

47

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

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The Human Genome Browser at UCSC

W. James Kent, Charles W. Sugnet, Terrence S. Furey et al. · Genome Research · 2002 · 10.9K citations · Full text

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Adjusting batch effects in microarray expression data using empirical Bayes methods

W. Evan Johnson, Cheng Li, Ariel Rabinovic · Biostatistics · 2006 · 9.1K citations · Full text

, , +12

Mapping and analysis of chromatin state dynamics in nine human cell types

Jason Ernst, Pouya Kheradpour, Tarjei S. Mikkelsen et al. · Nature · 2011 · 3.1K citations

, , +14

Single-cell chromatin accessibility reveals principles of regulatory variation

Jason D. Buenrostro, Beijing Wu, Ulrike Litzenburger et al. · Nature · 2015 · 2.5K citations · Full text

, , +13