W. Evan Johnson

Adjusting batch effects in microarray expression data using empirical Bayes methods

W. Evan Johnson, Cheng Li, Ariel Rabinovic · Biostatistics · 2006 · 8.7K citations · Full text

The <tt>sva</tt> package for removing batch effects and other unwanted variation in high-throughput experiments

Jeffrey T. Leek, W. Evan Johnson, Hilary S. Parker et al. · Bioinformatics · 2012 · 6.4K citations · Full text

ComBat-seq: batch effect adjustment for RNA-seq count data

Yuqing Zhang, Giovanni Parmigiani, W. Evan Johnson · NAR Genomics and Bioinformatics · 2020 · 1.6K citations · Full text

Engineering, Genetics, Transcriptomics Technology +18

Decontamination of ambient RNA in single-cell RNA-seq with DecontX

Shiyi Yang, Sean Corbett, Yusuke Koga et al. · Genome biology · 2020 · 567 citations · Full text

Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing

Jason O'Rawe, Tao Jiang, Guangqing Sun et al. · Genome Medicine · 2013 · 457 citations · Full text