Physiological Genomics · 2018 · 227 citations · 30 references
Life SciencesBioinformaticsMicrobiologyMedical MicrobiologyMicrobial EcologyMicrobiome ResearchGut MicrobiomeGut MicrobiotaMicrobial Community ProfilingMicrobiome CompositionMicrobiome DiversityTaxonomic Profiling16S Ribosomal Ribonucleic Acid (Rrna) SequencingGut Microbiome DiversityGut Microbiota CompositionGut Microbiota DysbiosisMicrobial Community CompositionMicrobial Community DiversityMicrobiome Signatures Of DiseaseTaxon Profiling
Gut microbiota dysbiosis has been considered to be an important risk factor that contributes to coronary artery disease (CAD), but limited evidence exists about the involvement of gut microbiota in the disease. Our study aimed to characterize the dysbiosis signatures of gut microbiota in coronary artery disease. The gut microbiota represented in stool samples were collected from 70 patients with coronary artery disease and 98 healthy controls. 16S rRNA sequencing was applied, and bioinformatics methods were used to decipher taxon signatures and function alteration, as well as the microbial network and diagnostic model of gut microbiota in coronary artery disease. Gut microbiota showed decreased diversity and richness in patients with coronary artery disease. The composition of the microbial community changed; Escherichia-Shigella [false discovery rate (FDR = 7.5*10 −5 ] and Enterococcus (FDR = 2.08*10 −7 ) were significant enriched, while Faecalibacterium (FDR = 6.19*10 −10 ), Subdoligranulum (FDR = 1.63*10 −6 ), Roseburia (FDR = 1.95*10 −9 ), and Eubacterium rectale (FDR = 2.35*10 −4 ) were significant depleted in the CAD group. Consistent with the taxon changes, functions such as amino acid metabolism, phosphotransferase system, propanoate metabolism, lipopolysaccharide biosynthesis, and protein and tryptophan metabolism were found to be enhanced in CAD patients. The microbial network revealed that Faecalibacterium and Escherichia-Shigella were the microbiotas that dominated in the healthy control and CAD groups, respectively. The microbial diagnostic model based on random forest also showed probability in identifying those who suffered from CAD. Our study successfully identifies the dysbiosis signature, dysfunctions, and comprehensive networks of gut microbiota in CAD patients. Thus, modulation targeting the gut microbiota may be a novel strategy for CAD treatment.
30
Harry Sokol, Bénédicte Pigneur, Laurie Watterlot et al. · Proceedings of the National Academy of Sciences · 2008 · 4.3K citations · Full text
Human gut microbes impact host serum metabolome and insulin sensitivity
Helle Pedersen, Valborg Guðmundsdóttir, Henrik Bjørn Nielsen et al. · Nature · 2016 · 2.1K citations · Full text
Gut Microbial Metabolite TMAO Enhances Platelet Hyperreactivity and Thrombosis Risk
Weifei Zhu, Jill C. Gregory, Elin Org et al. · Cell · 2016 · 1.9K citations · Full text