Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations

Life Sciences, Bioinformatics, Sequence Analysis +3

Fast and sensitive protein alignment using DIAMOND

Benjamin Buchfink, Chao Xie, Daniel H. Huson · Nature Methods · 2014 · 15.2K citations

Life Sciences, Biochemistry, Molecular Biology +8

Space/time trade-offs in hash coding with allowable errors

Burton H. Bloom · Communications of the ACM · 1970 · 7.5K citations · Full text

Computing, Computer Engineering, Computer Science +11

MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets

Martin Steinegger, Johannes Söding · Nature Biotechnology · 2017 · 5.1K citations

Life Sciences, Bioinformatics, Molecular Biology +14

A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers

Guillaume Marçais, Carl Kingsford · Bioinformatics · 2011 · 5.1K citations · Full text

Computing, Bioinformatics, Computer Science +17