Fatemeh Almodaresi - Concepedia

Author

Fatemeh Almodaresi

Stony Brook University ORCID

Also Known As

Almodaresi, Fatemeh, Fatemeh Almodaresi

Publications

694

Citations

H-Index

Concepts

All Affiliations

Stony Brook University University of Maryland, College Park Carnegie Mellon University Friedrich Miescher Institute SIB Swiss Institute of Bioinformatics

About

Fatemeh Almodaresi is an author at Stony Brook University specializing in computational biology, bioinformatics, and genomics.

Top Concepts

#	Concept	H-Index	Publications	Citations
1	Engineering	4	4	215
2	Medicine	4	4	138
3	Computer Science	4	4	215
4	Natural Sciences	1	1	31
5	Biology	1	1	31

Fatemeh Almodaresi

Publications

648

Citations

H-Index

Page 1

	Year	Citations
Alignment and mapping methodology influence transcript abundance estimation Avi Srivastava, Laraib Malik, Hirak Sarkar, Genome biology	2020	183
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index Prashant Pandey, Fatemeh Almodaresi, Michael A. Bender, Cell Systems EngineeringInformation RetrievalString-searching AlgorithmData MiningComputational Biology	2018	108
A space and time-efficient index for the compacted colored de Bruijn graph Fatemeh Almodaresi, Hirak Sarkar, Avi Srivastava, Bioinformatics	2018	94
Rainbowfish: A Succinct Colored de Bruijn Graph Representation Fatemeh Almodaresi, Prashant Pandey, Rob Patro EngineeringGeneticsGenomicsGraph ProcessingBruijn Graph	2017	50
An Efficient, Scalable, and Exact Representation of High-Dimensional Color Information Enabled Using de Bruijn Graph Search Fatemeh Almodaresi, Prashant Pandey, Michael Ferdman, Journal of Computational Biology Bruijn Graph SearchEngineeringGeneticsColor CorrectionGenomics	2020	37
PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index Fatemeh Almodaresi, Mohsen Zakeri, Rob Patro Bioinformatics	2021	35
Alignment and mapping methodology influence transcript abundance estimation Avi Srivastava, Laraib Malik, Hirak Sarkar, GeneticsMolecular BiologyTranscriptomics TechnologyGenomicsSequence Alignment	2019	31
Improved data-driven likelihood factorizations for transcript abundance estimation Mohsen Zakeri, Avi Srivastava, Fatemeh Almodaresi, Bioinformatics	2017	29
Rainbowfish: A Succinct Colored de Bruijn Graph Representation Fatemeh Almodaresi, Prashant Pandey, Rob Patro DROPS (Schloss Dagstuhl – Leibniz Center for Informatics) EngineeringGeneticsGenomicsGraph ProcessingBruijn Graph	2017	20
AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite Giorgos Skoufos, Fatemeh Almodaresi, Mohsen Zakeri, Genome biology	2022	20

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