Fatemeh Almodaresi

Alignment and mapping methodology influence transcript abundance estimation

Avi Srivastava, Laraib Malik, Hirak Sarkar et al. · Genome biology · 2020 · 183 citations · Full text

Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

Prashant Pandey, Fatemeh Almodaresi, Michael A. Bender et al. · Cell Systems · 2018 · 108 citations · Full text

Engineering, Information Retrieval, String-searching Algorithm +8

A space and time-efficient index for the compacted colored de Bruijn graph

Fatemeh Almodaresi, Hirak Sarkar, Avi Srivastava et al. · Bioinformatics · 2018 · 94 citations · Full text

Rainbowfish: A Succinct Colored de Bruijn Graph Representation

Fatemeh Almodaresi, Prashant Pandey, Rob Patro · 2017 · 50 citations · Full text

Engineering, Genetics, Genomics +16

An Efficient, Scalable, and Exact Representation of High-Dimensional Color Information Enabled Using de Bruijn Graph Search

Fatemeh Almodaresi, Prashant Pandey, Michael Ferdman et al. · Journal of Computational Biology · 2020 · 37 citations · Full text

Bruijn Graph Search, Engineering, Genetics +27