The Molecular Signatures Database Hallmark Gene Set Collection

Arthur Liberzon, Chet Birger, Helga Thorvaldsdóttir, +3

Cell Systems

Functional GenomicsEngineeringBioinformatics DatabaseBiological DatabaseGene Recognition +7

DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors

Christopher S. McGinnis, Lyndsay M. Murrow, Zev J. Gartner

Cell Systems

Doublet DetectionFunctional GenomicsSequencingEngineeringSingle Cell Sequencing +13

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Neva C. Durand, Muhammad S. Shamim, Ido Machol, +4

Cell Systems

Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data

Samuel L. Wolock, Romain Lopez, Allon M. Klein

Cell Systems

Systems BiologyFunctional GenomicsEngineeringSingle Cell SequencingMedicine +13

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

Neva C. Durand, James Robinson, Muhammad S. Shamim, +4

Cell Systems

Hi-c Contact MapsReal-time VisualizationEngineeringGeovisualizationGenetics +22

A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure

Maayan Baron, Adrian Veres, Samuel L. Wolock, +9

Cell Systems

BioinformaticsCell LineageHuman CellEngineeringSingle Cell Sequencing +10

A Single-Cell Transcriptome Atlas of the Human Pancreas

Mauro J. Muraro, Gitanjali Dharmadhikari, Dominic Grün, +8

Cell Systems

Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

Kyle Ellrott, Matthew H. Bailey, Gordon Saksena, +720

Cell Systems

EngineeringGeneticsGenomicsArtifact FilteringTcga Data +15

Plasma Proteome Profiling to Assess Human Health and Disease

Philipp E. Geyer, Nils A. Kulak, Garwin Pichler, +3

Cell Systems

Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis

Byoung‐Mo Koo, George Kritikos, Jeremiah D. Farelli, +12

Cell Systems