Concepedia

Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis

Peter Savas, Balaji Virassamy, Chengzhong Ye, Agus Salim, Christopher Mintoff, Franco Caramia, Roberto Salgado, David J. Byrne, Zhi L. Teo, Sathana Dushyanthen,

Nature Medicine · 2018 · 991 citations · 49 references

Concepts

Life SciencesImmunologyOncologyBreast OncologyCancer ImmunologyTumor ImmunologySingle-cell AnalysisSingle-cell ClusteringSingle-cell GenomicsSingle-cell Rna Sequencing AnalysisSingle-cell TranscriptomicsT Cell Responses To TumorsSingle-cell Immune AnalysisSingle-cell Rna SequencingTime-resolved Single-cell AnalysisTissue-resident Memory T Cells

References

49

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

Life Sciences, Bioinformatics, Biostatistics +14

limma powers differential expression analyses for RNA-sequencing and microarray studies

Matthew E. Ritchie, Belinda Phipson, Di Wu et al. · Nucleic Acids Research · 2015 · 43K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

Molecular portraits of human breast tumours

Charles M. Perou, Thérese Sørlie, Michael B. Eisen et al. · Nature · 2000 · 16.3K citations

Medicine, Molecular Biology, Oncology +14

Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal

Jianjiong Gao, Bülent Arman Aksoy, Uğur Doğrusöz et al. · Science Signaling · 2013 · 15.9K citations · Full text

Medicine, Bioinformatics, Oncology +17

Near-optimal probabilistic RNA-seq quantification

Nicolas Bray, Harold Pimentel, Páll Melsted et al. · Nature Biotechnology · 2016 · 11K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +6