Chengzhong Ye

Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis

Peter Savas, Balaji Virassamy, Chengzhong Ye et al. · Nature Medicine · 2018 · 963 citations

Breast Oncology, Oncology, Improved Prognosis +15

Data denoising with transfer learning in single-cell transcriptomics

Jingshu Wang, Divyansh Agarwal, Mo Huang et al. · Nature Methods · 2019 · 199 citations · Full text

Functional Genomics, Engineering, Single Cell Sequencing +8

Surface protein imputation from single cell transcriptomes by deep neural networks

Zilu Zhou, Chengzhong Ye, Jingshu Wang et al. · Nature Communications · 2020 · 88 citations · Full text

Cross-protein transfer learning substantially improves disease variant prediction

Milind Jagota, Chengzhong Ye, Carlos Albors et al. · Genome biology · 2023 · 66 citations · Full text

DECENT: differential expression with capture efficiency adjustmeNT for single-cell RNA-seq data

Chengzhong Ye, Terence P. Speed, Agus Salim · Bioinformatics · 2019 · 61 citations · Full text