Molecular & Cellular Proteomics · 2017 · 24 citations · 44 references
Life SciencesBiochemistryMolecular MedicineDialysisProteomicsRenal Replacement TherapyClinical ProteomicsMembrane ProteomicsPeritoneal DialysisProtein IdentificationProteomic BiomarkersQuantitative ProteomicsBiofluid ProteomicsDisease ProteomicsIsobaric LabelingIsobaric Labeling ChemistriesPlasma ProteomicsProtein Analysis In Body FluidsProteomic Data AnalysisProteomic Signatures
= 20) treated in an open-label, randomized, two-period, cross-over clinical trial with standard PD fluid or with a novel PD fluid supplemented with alanyl-glutamine (AlaGln).With this workflow we identified 2506 unique proteins in the PDE proteome, greatly increasing coverage beyond the 171 previously-reported proteins. The proteins identified range from high abundance plasma proteins to low abundance cellular proteins, and are linked to larger numbers of biological processes and pathways, some of which are novel for PDE. Interestingly, proteins linked to membrane remodeling and fibrosis are overrepresented in PDE compared with plasma, whereas the proteins underrepresented in PDE suggest decreases in host defense, immune-competence and response to stress. Treatment with AlaGln-supplemented PD fluid is associated with reduced activity of membrane injury-associated mechanisms and with restoration of biological processes involved in stress responses and host defense.Our study represents the first application of the PDE proteome in a randomized controlled prospective clinical trial of PD. This novel proteomic workflow allowed detection of low abundance biomarkers to define pathomechanism-associated molecular signatures in PD and their alterations by a novel therapeutic intervention.
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