Concepedia

Shallow Whole Genome Sequencing for the Assembly of Complete Chloroplast Genome Sequence of Arachis hypogaea L.

Sudheesh K. Prabhudas, Sowjanya Prayaga, Madasamy Parani, Purushothaman Natarajan

Frontiers in Plant Science · 2016 · 28 citations · 12 references

DOIFull text

Open access

Concepts

Abstract

DATA REPORT article Front. Plant Sci., 27 July 2016Sec. Computational Genomics Volume 7 - 2016 | https://doi.org/10.3389/fpls.2016.01106

References

12

Cutadapt removes adapter sequences from high-throughput sequencing reads

Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text

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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino, Ewan Birney · Genome Research · 2008 · 9.7K citations · Full text

, , +14

SOAPdenovo2: an empirically improved memory-efficient short-read <i>de novo</i> assembler

Ruibang Luo, Binghang Liu, Yinlong Xie et al. · GigaScience · 2012 · 5.6K citations · Full text

, , +17

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

Aaron E. Darling, Bob Mau, Nicole T. Perna · PLoS ONE · 2010 · 4.1K citations · Full text

, , +10

Automatic annotation of organellar genomes with DOGMA

Stacia K. Wyman, Robert K. Jansen, Jeffrey L. Boore · Bioinformatics · 2004 · 3.1K citations · Full text

, , +17