Genome Announcements · 2015 · 13 citations · 11 references
Life SciencesGeneticsMicrobiologyGenomicsMedical MicrobiologyMicrobial GeneticsDna SequencingFoodborne InfectionsFoodborne PathogensMicrobial Food SafetyPathogen GenomicsRaw Milk MicrobiologyDairy-borne PathogensEscherichia ColiFoodborne Pathogens In CheeseMilkborne PathogensPathogenic Microorganisms In CheeseRaw Milk Cheese MicrobiologyRaw Milk ContaminationWhole-genome Sequence Analysis
The consumption of raw milk cheese can expose populations to Shiga toxin-producing Escherichia coli (STEC). We report here the genome sequence of an E. coli O26:H11 strain isolated from humans during the first raw milk cheese outbreak described in France (2005).
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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino, Ewan Birney · Genome Research · 2008 · 9.7K citations · Full text
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
Aaron E. Darling, Bob Mau, Frederick R. Blattner et al. · Genome Research · 2004 · 5.2K citations · Full text
Aleksey V. Zimin, Guillaume Marçais, Daniela Puiu et al. · Bioinformatics · 2013 · 1.6K citations · Full text
Life Sciences, Biology, Microbiology +16