Concepedia

COPE: an accurate <i>k</i>-mer-based pair-end reads connection tool to facilitate genome assembly

Binghang Liu, Jianying Yuan, Siu‐Ming Yiu, Zhenyu Li, Yinlong Xie, Yanxiang Chen, Yujian Shi, Hao Zhang, Yingrui Li, Tak‐Wah Lam,

Bioinformatics · 2012 · 145 citations · 12 references

DOIFull text

Open access

Abstract

twlam@cs.hku.hk or luoruibang@genomics.org.cn

References

12

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoč, Steven L. Salzberg · Bioinformatics · 2011 · 15.1K citations · Full text

De novo assembly of human genomes with massively parallel short read sequencing

Ruiqiang Li, Hongmei Zhu, Jue Ruan et al. · Genome Research · 2009 · 3K citations · Full text

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PANDAseq: paired-end assembler for illumina sequences

Andre Masella, Andrea K. Bartram, Jakub Truszkowski et al. · BMC Bioinformatics · 2012 · 2.2K citations · Full text

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

Sante Gnerre, Iain MacCallum, Dariusz Przybylski et al. · Proceedings of the National Academy of Sciences · 2010 · 1.6K citations · Full text

Adaptive seeds tame genomic sequence comparison

Szymon M. Kiełbasa, Raymond Wan, Kengo Sato et al. · Genome Research · 2011 · 1.4K citations · Full text